| Organization | Department & Ministry | Institution Type | State |
|---|---|---|---|
| Martin Luther Christian University | — | Centres of Higher Learning | Meghalaya |
| Marwadi University | — | Centres of Higher Learning | Gujarat |
| Mata Gujri University | — | Centres of Higher Learning | Bihar |
| MATS University | — | Centres of Higher Learning | Chhattisgarh |
| Maulana Abul Kalam Azad University of Technology | — | Centres of Higher Learning | West Bengal |
| Maulana Azad National Institute of Technology | — | Centres of Higher Learning | Madhya Pradesh |
| Maulana Azad University | — | Centres of Higher Learning | Rajasthan |
| M.B.M. University | — | Centres of Higher Learning | Rajasthan |
| Medi-Caps University | — | Centres of Higher Learning | Madhya Pradesh |
| Mewar University | — | Centres of Higher Learning | Rajasthan |
| MGM University | — | Centres of Higher Learning | Maharashtra |
| Mind Power University | — | Centres of Higher Learning | Uttarakhand |
| MIT ADT University | — | Centres of Higher Learning | Maharashtra |
| MIT University of Meghalaya | — | Centres of Higher Learning | Meghalaya |
| MIT Vishwaprayag University | — | Centres of Higher Learning | Maharashtra |
| Mizoram University | — | Centres of Higher Learning | Mizoram |
| Mody University of Science and Technology | — | Centres of Higher Learning | Rajasthan |
| Mohammad Ali Jauhar University | — | Centres of Higher Learning | Uttar Pradesh |
| Mohan Babu University | — | Centres of Higher Learning | Andhra Pradesh |
| Mohanlal Sukhadia University | — | Centres of Higher Learning | Rajasthan |
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