| Organization | Department & Ministry | Institution Type | State |
|---|---|---|---|
| Sikkim Manipal University | — | Centres of Higher Learning | Sikkim |
| Sikkim Professional University | — | Centres of Higher Learning | Sikkim |
| Sikkim Skill University | — | Centres of Higher Learning | Sikkim |
| Sikkim University | — | Centres of Higher Learning | Sikkim |
| Silicon University | — | Centres of Higher Learning | Odisha |
| Silver Oak University | — | Centres of Higher Learning | Gujarat |
| Sindhu Central University | — | Centres of Higher Learning | Ladakh |
| Singhania University | — | Centres of Higher Learning | Rajasthan |
| Sir Padampat Singhania University | — | Centres of Higher Learning | Rajasthan |
| Sister Nivedita University | — | Centres of Higher Learning | West Bengal |
| SKIPS University | — | Centres of Higher Learning | Gujarat |
| S. K. S. International University | — | Centres of Higher Learning | Uttar Pradesh |
| Soban Singh Jeena University | — | Centres of Higher Learning | Uttarakhand |
| Somaiya Vidyavihar University | — | Centres of Higher Learning | Maharashtra |
| Sona Devi University | — | Centres of Higher Learning | Jharkhand |
| South Asian University | — | Centres of Higher Learning | Delhi |
| Spicer Adventist University | — | Centres of Higher Learning | Maharashtra |
| Sri Aurobindo University | — | Centres of Higher Learning | Madhya Pradesh |
| Sri Balaji University | — | Centres of Higher Learning | Maharashtra |
| Sri Dev Suman Uttarakhand University | — | Centres of Higher Learning | Uttarakhand |
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