| Organization | Department & Ministry | Institution Type | State |
|---|---|---|---|
| Central Herd Registration Scheme (CHRS), Ongole | Ministry of Fisheries, Animal Husbandry and Dairying | — | Andhra Pradesh |
| Central Herd Registration Unit (CHRU), Ahmedabad | Ministry of Fisheries, Animal Husbandry and Dairying | — | Gujarat |
| Central Herd Registration Unit (CHRU), Ajmer | Ministry of Fisheries, Animal Husbandry and Dairying | — | Rajasthan |
| Central Herd Registration Unit (CHRU), Rohtak | Ministry of Fisheries, Animal Husbandry and Dairying | — | Haryana |
| Central Himalayan Environment Association (CHEA) | — | — | Uttarakhand |
| Central India Institute of Medical Sciences | — | — | Maharashtra |
| Central Inland Fisheries Research Institute (CIFRI) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | West Bengal |
| Central Institute for Cotton Research (CICR) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Maharashtra |
| Central Institute for Research on Buffaloes (CIRB) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Haryana |
| Central Institute for Research on Cattle (CIRC) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Uttar Pradesh |
| Central Institute for Research on Goats (CIRG) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Uttar Pradesh |
| Central Institute for Women in Agriculture (CIWA) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Odisha |
| Central Institute of Agricultural Engineering (CIAE) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Madhya Pradesh |
| Central Institute of Arid Horticulture (CIAH) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Rajasthan |
| Central Institute of Brackishwater Aquaculture (CIBA) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Tamil Nadu |
| Central Institute of Fisheries Education (CIFE) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Maharashtra |
| Central Institute of Fisheries Technology (CIFT) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Kerala |
| Central Institute of Freshwater Aquaculture (CIFA) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Odisha |
| Central Institute of Medicinal and Aromatic Plants (CIMAP) | Ministry of Science & Technology (MoST) | — | Uttar Pradesh |
| Central Institute of Mining and Fuel Research (CIMFR) | Ministry of Science & Technology (MoST) | — | Jharkhand |