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Development of Advanced Nano-Biosensors for Early Detection of Agricultural Pathogens Using CRISPR-Cas Technology

Implementing Organization

Principal Investigator
Prof. Rajiv Kumar Sharma
Professor & Head
|
IIT Delhi, New Delhi
Department of Biochemical Engineering and Biotechnology
rajiv.sharma@iitd.ac.in
Principal Investigator
Dr. Priya Mehta
Senior Scientist
|
National Institute of Plant Genome Research (NIPGR)
Plant Molecular Biology Group
priya.mehta@nipgr.res.in
CO-Principal Investigator
Dr. Amit Gupta
Principal Scientist
|
Indian Agricultural Research Institute (IARI)
Division of Plant Pathology
amit.gupta@iari.res.in
CO-Principal Investigator
Dr. Sunita Verma
Associate Professor
|
Punjab Agricultural University
Department of Plant Breeding & Genetics
sunita.verma@pau.edu

About

This research project focuses on the development of next-generation nano-biosensors integrating CRISPR-Cas12a technology for ultra-sensitive and rapid detection of major agricultural pathogens including Fusarium oxysporum, Phytophthora infestans, and Xanthomonas oryzae. The project addresses the critical need for point-of-care diagnostic tools in precision agriculture, reducing dependence on costly and time-consuming laboratory-based PCR methods.

The nano-biosensor platform combines gold nanoparticle-functionalized graphene field-effect transistors (GFETs) with CRISPR-based nucleic acid amplification, achieving a detection limit of 10 femtomolar — approximately 1000-fold more sensitive than conventional ELISA-based methods. Field trials were conducted across 12 agricultural districts in Haryana and Punjab, demonstrating real-world applicability.

Patents

CRISPR-Cas12a Integrated Gold Nanoparticle Biosensor Device for Rapid Agricultural Pathogen Detection
Proprietary CRISPR Guide RNA Library for 47 Agricultural Crop Pathogen Strains
Graphene Field-Effect Transistor Based Portable Diagnostic Platform with Solar-Powered Reader Module
Lateral Flow Assay Strip Integrated with CRISPR Collateral Cleavage for Field-Based Diagnostics

Achievements

  • Successfully developed prototype nano-biosensor device achieving femtomolar detection sensitivity
  • Validated device performance across 3 major crop pathogens with 98.7% specificity
  • Completed field trials in 12 districts covering 450 farms
  • Technology transferred to 2 agri-tech startups for commercial scale-up
  • Trained 120 extension workers on device operation and data interpretation
  • Published 8 peer-reviewed articles in high-impact journals (average IF > 7.5)

Outcome / Output

Prototypes Developed: 500 field-ready units manufactured at pilot scale
Startups Supported: 2 (AgriSense Technologies Pvt. Ltd., NanoDiag India Pvt. Ltd.)
Technologies Licensed: 3 licensing agreements executed
Research Papers: 8 published, 3 under review
Patents Filed: 4 (2 granted, 2 pending)
Training Programs: 6 workshops conducted, 120 participants trained

Publications

  • Sharma R, Mehta P, Singh K. (2023). "CRISPR-Cas12a integrated gold nanoparticle biosensor for plant pathogen detection." ACS Nano, 17(4), 3892–3905. DOI: 10.1021/acsnano.2c09841
  • Mehta P, Gupta A, Verma S. (2022). "Graphene field-effect transistors functionalized with aptamers for pathogen biosensing." Biosensors and Bioelectronics, 198, 113847.
  • Singh K, Sharma R. (2022). "Point-of-care diagnostics for Phytophthora infestans using lateral flow assay coupled CRISPR." Nature Communications, 13, 4512.

Industry Collaboration

AgriSense Technologies Pvt. Ltd. (Hyderabad), NanoDiag India Pvt. Ltd. (Pune), Tata Chemicals Innovation Centre (Mumbai)

Source

Source
DST
Source Title
DST-SERB Research Project Database
Quick Information
Area of Research
Agricultural Sciences
Focus Area
Nanotechnology, Biosensing, Agricultural Biotechnology, CRISPR Gene Editing
Start Year
2021
End Year
2024
Duration
3 Years (April 2021 – March 2024)
Sanction Amount
₹ 4.75 Cr
Status
Completed
Contact
Prof. Rajiv Sharma, Principal Investigator | Department of Biotechnology, IIT Delhi | Email: rajiv.sharma@iitd.ac.in | Phone: +91-11-2659-7432
Output
No. of Research Paper
08
Technologies (If Any)
03
No. of PhD Produced
3 Ph.D. students completed; 2 ongoing
No. of Patents
Filed : 00
Grant : 00
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