| Organization | Department & Ministry | Institution Type | State |
|---|---|---|---|
| National Board for Higher Mathematics (NBHM) | Ministry of Science & Technology (MoST) | Industry Related Associations, Research Institutions | Maharashtra |
| National Botanical Research Institute (NBRI) | Ministry of Science & Technology (MoST) | — | Uttar Pradesh |
| National Brain Research Centre (NBRC), Gurgaon | Ministry of Science & Technology (MoST) | Research Institutions | Haryana |
| National Bureau of Agricultural Insect Resources (NBAIR) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Karnataka |
| National Bureau of Agriculturally Important Microorganisms (NBAIM) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Uttar Pradesh |
| National Bureau of Animal Genetic Resources (NBAGR) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Haryana |
| National Bureau of Fish Genetic Resources (NBFGR) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Uttar Pradesh |
| National Bureau of Plant Genetic Resources (NBPGR) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Delhi |
| National Bureau of Soil Survey and Land Use Planning (NBSSLUP) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Maharashtra |
| National Center for Seismology (NCS) | Ministry of Earth Sciences (MoES) | Research Institutions | Delhi |
| National Centre for Cell Science (NCCS), Pune | Ministry of Science & Technology (MoST) | Research Institutions | Maharashtra |
| National Centre for Coastal Research (NCCR) | Ministry of Earth Sciences (MoES) | Research Institutions | Tamil Nadu |
| National Centre for Disease Control (NCDC) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Delhi |
| National Centre for Disease Informatics and Research (NCDIR), Bengaluru | Ministry of Health and Family Welfare (MoHFW) | Research Institutions | Karnataka |
| National Centre for Earth Science Studies (NCESS) | Ministry of Earth Sciences (MoES) | Research Institutions | Kerala |
| National Centre for High Pressure Studies (NCHPS), Kolkata | — | Centres of Excellence | West Bengal |
| National Centre for Medium-Range Weather Forecasting (NCMRWF) | Ministry of Earth Sciences (MoES) | Research Institutions | Uttar Pradesh |
| National Centre for Organic and Natural Farming (NCONF) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Uttar Pradesh |
| National Centre for Polar and Ocean Research (NCPOR) | Ministry of Earth Sciences (MoES) | Research Institutions | Goa |
| National Centre for Seismology (NCS) | Ministry of Earth Sciences (MoES) | — | Delhi |
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