| Organization | Department & Ministry | Institution Type | State |
|---|---|---|---|
| National Health and Education Society | — | — | Maharashtra |
| National High Speed Rail Corpn. Ltd. (NHSRCL) | Ministry of Railways | — | Delhi |
| National Homoeopathy Research Institute in Mental Health (NHRIMH) | Ministry of AYUSH | — | Kerala |
| National Horticultural Research & Development Foundation | — | — | Delhi |
| National Informatics Centre (NIC), New Delhi | Ministry of Electronics & Info. Tech (MeitY) | Research Institutions | Delhi |
| National Informatics Centre Services Inc. (NICSI), New Delhi | Ministry of Electronics & Info. Tech (MeitY) | Research Institutions | Delhi |
| National Innovation Foundation – India (NIF) | Ministry of Science & Technology (MoST) | National Academies | Gujarat |
| National Institute for Empowerment of Person with Multiple Disabilities (NIEPMD) | Ministry of Social Justice and Empowerment (Disabilities) | — | Tamil Nadu |
| National Institute for Implementation Research on Non-Communicable Diseases (NIIRNCD) | Ministry of Health and Family Welfare (MoHFW) | — | Rajasthan |
| National Institute for Interdisciplinary Science and Technology (NIIST) | Ministry of Science & Technology (MoST) | — | Kerala |
| National Institute for Locomoter Disabilities (NILD) | Ministry of Social Justice and Empowerment (Disabilities) | — | West Bengal |
| National Institute for Plant Biotechnology (NIPB) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Delhi |
| National Institute for Research in Environmental Health (NIREH), Bhopal | Ministry of Health and Family Welfare (MoHFW) | Research Institutions | Madhya Pradesh |
| National Institute for Research in Reproductive and Child Health (NIRRCH) | Ministry of Health and Family Welfare (MoHFW) | — | Maharashtra |
| National Institute for Research in Reproductive Health (NIRRH), Mumbai | Ministry of Health and Family Welfare (MoHFW) | Research Institutions | Maharashtra |
| National Institute for Research in Tribal Health (NIRTH), Jabalpur | Ministry of Health and Family Welfare (MoHFW) | Research Institutions | Madhya Pradesh |
| National Institute for Research in Tuberculosis (NIRT) | Ministry of Health and Family Welfare (MoHFW) | — | Tamil Nadu |
| National Institute for the Empowerment of Persons with Visual Disabilities (NIEPVD) | Ministry of Social Justice and Empowerment (Disabilities) | — | Uttarakhand |
| National Institute for the Empowerment of Person with Intellectual Disabilities (NIEPID) | Ministry of Social Justice and Empowerment (Disabilities) | — | Telangana |
| National Institute of Abiotic Stress Management (NIASM) | Ministry of Agriculture and Farmers Welfare (MoAFW) | — | Maharashtra |